tags
454 BAM Bayes' theorem EST Illumina RNAseq SFF SNP SNP analysis alignment alignments annotation assembly comparison bayesian big data biocore biohaskell bioinformatics blast bloom filters carbon footprint climate change clustering conscience data storage de novo de novo assembly de novo genome economy environment evolution fasta frequentist genome sequencing hardware hpc illustration judy arrays k-mer library linux make meta metadata nuclear nuclear power opinion optimization parsing phylogeny population genetics productivity profiling programming science sequence alignment sequence analysis sequencing shell short reads software solar solar power static types statistics transalign ubuntu unexplained varan vector masking war whales xmlPosts tagged sequence analysis
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Information content and allele frequency difference - July 17, 2014
sequence analysis, SNP, varan
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Parallel SNP identification - March 26, 2014
sequence analysis, SNP, population genetics
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k-mer counting in a high-level language? - November 22, 2013
sequence analysis, k-mer, judy arrays
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Frequency counting in Haskell - November 11, 2013
sequence analysis, SFF, 454, parsing
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A big data approach to bioinformatics - September 10, 2013
big data, sequence analysis, RNAseq, clustering, transalign
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Presentation on the anatomy of de novo genome projects - October 17, 2012
sequence analysis, de novo, genome sequencing
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Transitive alignments (and why they matter) - October 10, 2012
sequence analysis, alignments, annotation
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Calculating insert stats from BAM files - September 11, 2012
sequence analysis, BAM
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Compressing biological sequences - June 22, 2011
sequence analysis, SFF, 454, parsing
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Searching for poly(A) tails - December 14, 2009
sequence analysis, fasta, EST
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454 sequencing and parsing the SFF binary format - November 14, 2008
sequence analysis, SFF, 454, parsing
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A plan for Bloom filters - July 31, 2008
sequence analysis, bloom filters
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Optimization week':' making Haskell go faster - May 18, 2008
sequence analysis, annotation, optimization, profiling
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Can you spare five minutes? - May 9, 2008
sequence analysis, clustering
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Cleaning up sequences - May 8, 2008
sequence analysis, vector masking
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