Posts tagged ‘de novo assembly’

• Constructing An Assembly Evaluation Pipeline - April, 2012
  de novo assembly, make, assembly comparison

  Often, genome assemblies report metrics like N50 or number of contigs, but this says very little about the assembly accuracy or usefulness. The asmeval pipeline is an attempt at a more comprehensive approach, and makes it easier to compare assemblies on a broader set of parameters. It is still in development, so please contact me if you want to test it.
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• Presentation on the (lack of) data management practices - June, 2011
  de novo assembly, make, assembly comparison

  During a presentation on the data managment practices I employ - or rather, would like to employ - I mentioned some commonly read and cited works that I thought were relevant. Since there was some interest, the list is repeated here.
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