454 BAM Bayes' theorem EST Illumina RNAseq SFF SNP SNP analysis alignment alignments annotation assembly comparison bayesian big data biocore biohaskell bioinformatics blast bloom filters carbon footprint clustering conscience data storage de novo de novo assembly de novo genome environment evolution fasta frequentist genome sequencing hardware hpc illustration judy arrays k-mer library make meta metadata opinion optimization parsing phylogeny population genetics productivity profiling programming science sequence alignment sequence analysis sequencing shell short reads software static types statistics transalign unexplained varan vector masking whales xml



I work with bioinformatics at the Institute of Marine Research, Bergen, Norway.


Basically applying algorithms from computer scientists to data from biologists. Being interdisciplinary is a nice excuse for not doing proper work.


For those interested, there is a list of selected publications, which includes a link to a CV.

This site

This is a small experiment in building a blog using Hakyll, a static site generator.


The programming language which Hakyll is implemented in, and which I use for most of my programming projects.

Feedback? Please email ketil@malde.org.