Biohaskell

bioinformatics and haskell

Giving users what they want: Haskell scripts on the web with CGI

As a consequence of IWC policies, the Institute of Marine Research is required to store genetic identification of each minke whale that is hunted. This of course means that people will come to me for help in bridging the gap between test tubes and the databases by providing some analysis tools that can extract [...]

Optimization week: making Haskell go faster

It seems to be optimization week on the haskell café mailing list. Inspired by a combination of Don Stewart’s blog post about how to optimize for speed and the sorry performance of my xml2x program, I thought this would be good time to see if things could be improved. In its current [...]

Can you spare five minutes?

…to write a simple, but useful and efficient bioinformatics program? Here’s how to build a simple tool to extract a clustering from an ACE file, using functionality in the bioinformatics library. It is about three lines of actual code, it is fast, and it is efficient.

« Previous Page