Bloom filters is apparently a relatively old technology, dating from the 1970s or so, but it has somehow escaped my radar until Bryan O’Sullivan posted a message to the haskell mailing list announcing a high-performance implementation in Haskell, perhaps to support a chapter in the upcoming book. You can read all about Bloom filters on [...]
Posted on July 31st, 2008 by ketil
Filed under: EST analysis, Examples, Optimization | 1 Comment »
Just some quick notes:
Hackage submissions updated
There seems to have been problems with some of the bioinformatics applications on Hackage, thanks to Don S. for pointing it out. That should be fixed now by new uploads, but I’m still waiting for the automatic builds to register results. An, since you ask, it was all [...]
Posted on July 31st, 2008 by ketil
Filed under: Uncategorized | 1 Comment »
My current development project is an EST pipeline. For various reasons, it is implemented in shell — bash, to be exact. In other words, the pipeline is a script, or rather a set of scripts, that will tie together the various stages: masking, clustering, assembly, and annotation.
As in any program, there are many occasions where [...]
Posted on July 11th, 2008 by ketil
Filed under: EST analysis, Examples | 1 Comment »